Publikationen

Rios-Galicia, B., Sáenz, J.S., Yergaliyev, T., Roth C., Camarinha-Silva, A., Seifert, J. 2024. Novel taxonomic and functional diversity of eight bacteria from the upper digestive tract of chicken. International Journal of Systematic and Evolutionary Microbiology. 74(1): 006210. doi: 10.1099/ijsem.0.006210.

Amin, N., Schwarzkopf, S., Tröscher-Mußotter, J., Camarinha-Silva, A., Dänicke, S., Huber, K., Frahm, J., Seifert, J.. 2023. Host metabolome and faecal microbiome shows potential interactions impacted by age and weaning times in calves. Animal Microbiome. 5. 12. doi: 10.1186/s42523-023-00233-z

Berghaus, D., Haese, E., Weishaar, R., Sarpong, N., Kurz, A., Seifert, J., Camarinha-Silva, A., Bennewitz, J., Chillon, T., Stefanski, V., Rodehutscord, M . 2023. Nitrogen and lysine utilization efficiencies, protein turnover, and blood urea concentrations in crossbred grower pigs at marginal dietary lysine concentration.  Journal of Animal Science. skad335. doi:10.1093/jas/skad335

Dahl, S., Seifert, J., Camarinha-Silva, A., Hernández-Arriaga, A., Windisch, W., König, A. 2023. “Get the best out of what comes in” – Adaptation of the microbiota of chamois (Rupicapra rupicapra) to seasonal forage availability in the Bavarian Alps. Frontiers in Microbiology. 14. https://doi.org/10.3389/fmicb.2023.1238744

Dahl, S., Seifert, J., Camarinha-Silva, A., Cheng, Y-C., Hernández-Arriaga, A., Hudler, M., Windisch, W., König, A. 2023. Microbiota and nutrient portraits of European roe deer (Capreolus capreolus) rumen contents in characteristic southern German habitats. Microbial Ecology. 86(4):3082-3096. doi: 10.1007/s00248-023-02308-5

Haas, V., Rodehutscord, M., Camarinha-Silva, A., Bennewitz, J. 2023. Inferring causal structures of gut microbiota diversity and feed efficiency traits in poultry using Bayesian learning and genomic structural equation models. Journal of Animal Science 101, skad044. doi.org/10.1093/jas/skad044

Lazzari, G., Münger, A., Heimo, D., Seifert, J., Camarinha-Silva, A., Borda-Molina, D., Zähner, M., Schrade, S., Kreuzer, M., Dohme-Meier, F. 2023. Effects of Tanniferous Sainfoin and Acacia mearnsii extract on Urinary N Excretion and Ammonia Volatilization From the Slurry of Dairy Cows. Animal Feed Science and Technology, 115577. doi.org/10.1016/j.anifeedsci.2023.115577

Lazzari, G., Münger, A., Eggerschwiler, L., Borda-Molina, D., Seifert, J., Camarinha-Silva, A., Schrade, S., Zähner, M., Zeyer, K., Kreuzer, M., Dohme-Meier, F. 2023. Effects of Acacia mearnsii added to silages differing in nutrient composition and condensed tannins on ruminal and manure-derived methane emissions of dairy cows. Journal of Dairy Science, 106(9). https://doi.org/10.3168/jds.2022-22901

Ponsuksili, S., Hadlich, F., Perdomo-Sabogal, A., Reyer, H., Oster, M., Trakooljul, N., Iqbal, M. A., Schmucker, S., Stefanski, V., Roth, C., Camarinha Silv, A., Huber, K., Sommerfeld, V., Rodehutscord, M., Wimmers, K. 2023. The dynamics of molecular, immune and physiological features of the host and the gut microbiome, and their interactions before and after onset of laying in two hen strains. Poultry Science 102, 102256, doi:10.1016/j.psj.2022.102256

Rios Galicia, B., Sáenz, J.S., Yergaliyev, T., Camarinha-Silva, A., Seifert, J. 2023. Host specific adaptations of Ligilactobacillus aviarius to poultry. Current Research in Microbial Sciences. 5. 100199. https://doi.org/10.1016/j.crmicr.2023.100199

Sáenz, J.S., Rios-Galicia, B., Rehkugler, B., Seifert, J. 2023. Dynamic development of viral and bacterial diversity during grass silage preservation. Viruses. 15(4). 951.https://doi.org/10.3390/v15040951

Serrano-Villar,S., Tincati, C., Raju, S.C., Sáenz, J.S., Moreno, E., Bargiela, R., Cabello, A., Sendagorta, E., Kurz, A., Perez Molina, J.A., de Benito, A., Hov, J.R., Fernandez-Lopez, L., Muriel, A., del Campo, R., Moreno, S., Trøseid, M., Seifert, J., Ferrer, M. (2023) Microbiome-derived cobalamin and succinyl-CoA as biomarkers for improved screening of anal cancer.  Nature Medicine. 29. 1738–1749. doi: 10.1038/s41591-023-02407-3

Dreyling C., Hasselmann M. 2022. The impact of dietary calcium and phosphorus on mitochondrial-linked gene expression in five tissues of laying hens. PLoS ONE 17, e0270550 https://doi.org/10.1371/journal.pone.0270550

Dreyling C., Hasselmann M. 2022. The dynamics of mitochondrial-linked gene expression among tissues and life stages in two contrasting strains of laying hens. PLoS ONE 17, e0262613 https://doi.org/10.1371/journal.pone.0262613

Haas, V., Vollmar, S., Preuß, S., Rodehutscord, M., Camarinha-Silva, A., Bennewitz, J. 2022. Composition of the ileum microbiota is a mediator between the host genome and phosphorus utilization and other efficiency traits in Japanese quail (Coturnix japonica). Genetics, Selection, Evolution 54, 20. doi: 10.1186/s12711-022-00697-8

Iqbal M.A., Reyer H., Oster M., Hadlich F., Trakooljul N., Perdomo-Sabogal A., Schmucker S., Stefanski V., Roth C., Camarinha Silva A., Huber K., Sommerfeld V., Rodehutscord M., Wimmers K., Ponsuksili S. 2022. Multi-Omics reveals different strategies in the immune and metabolic systems of high-yielding strains of laying hens. Frontiers in Genetics 13:858232 https://doi.org/10.3389/fgene.2022.858232

Künzel, S., Yergaliyev, T., Wild, K. J., Philippi, H., Petursdottir, A., Gunnlaugsdottir, H., Reynolds, C. K., Humphries, D. J., Camarinha-Silva, A., Rodehutscord, M. 2022. Methane reduction potential of brown seaweeds and their influence on nutrient degradation and microbiota composition in a rumen simulation technique. Frontiers in Microbiology 13, 889618, https://doi.org/10.3389/fmicb.2022.889618

Roth C., Sims T., Rodehutscord M., Seifert J., Camarinha-Silva A. 2022 The active core microbiota of two high-yielding laying hen breeds fed with different levels of calcium and phosphorus. Frontiers in Physiology 13. https://doi.org/10.3389/fphys.2022.951350

Röhm K., Gonzalez-Uarquin F., Harmel R.K., Trung M.N., Diener M., Fiedler D., Huber K., Seifert J. 2022 Investigation of a potential electrogenic transport-system for myo-inositol in the small intestine of laying hens. British Poultry Science 63, 91-97 https://doi.org/10.1080/00071668.2021.1958301

Trautmann A., Schleicher L., Koch A., Günther J., Steuber J., Seifert J. 2022 A shift towards succinate-producing Prevotella in the ruminal microbiome challenged with monensin. Proteomics. e2200121. https://doi.org/10.1002/pmic.202200121

Tröscher-Mußotter J., Deusch S., Borda-Molina D., Frahm J., Dänicke S., Camarinha-Silva A., Huber K., Seifert J. 2022 Cow’s microbiome from antepartum to postpartum: A long-term study covering two physiological challenges. Frontiers in Microbiology 13. https://doi.org/10.3389/fmicb.2022.1000750

Amin N., Schwarzkopf S., Kinoshita A., Tröscher-Mußotter J., Dänicke S., Camarinha-Silva A., Huber K., Frahm J., Seifert J. 2021. Evolution of rumen and oral microbiota in calves is influenced by age and time of weaning. Animal Microbiome 3, 31 https://doi.org/10.1186/s42523-021-00095-3

Amin N., Seifert J. 2021. Dynamic progression of the calf’s microbiome and its influence on host health. Computational and Structural Biotechnology Journal 19, 989-1001 https://doi.org/10.1016/j.csbj.2021.01.035

Borda-Molina D., Iffland H., Schmid M., Müller R., Schad S., Seifert J., Tetens J., Bessei W., Bennewitz J., Camarinha-Silva A. 2021. Gut microbial composition and predicted functions are not associated with feather pecking and antagonistic behavior in laying hens. Life 11, 235 https://doi.org/10.3390/life11030235

Borda-Molina D., Mátis G., Mackei M., Neogrády Z., Huber K., Seifert J., Camarinha-Silva A. 2021. Caeca microbial variation in broiler chickens as a result of dietary combinations using two cereal types, supplementation of crude protein and sodium butyrate. Frontiers in Microbiology 11, 617800 https://doi.org/10.3389/fmicb.2020.617800

Gonzalez-Uarquin F., Sommerfeld V., Rodehutscord M., Huber K. 2021. Interrelationship of myo-inositol pathways with systemic metabolic conditions in two strains of high-performance laying hens during their productive life span. Scientific Reports 11, 4641 https://doi.org/10.1038/s41598-021-84169-x

Heumann-Kiesler C., Sommerfeld V., Iffland H., Bennewitz J., Rodehutscord M., Hasselmann M. 2021. Insights into the mitochondrial and nuclear genome diversity of two high yielding strains of laying hens. Animals 11, 825 https://doi.org/10.3390/ani11030825

Hofmann T., Schmucker S., Sommerfeld V., Huber K., Rodehutscord M., Stefanski V. 2021. Immunomodulatory Effects of Dietary Phosphorus and Calcium in Two Strains of Laying Hens. Animals 11, 129 https://doi.org/10.3390/ani11010129

Iqbal M.A., Ali A., Hadlich F., Oster M., Reyer H., Trakooljul N., Sommerfeld V., Rodehutscord M., Wimmers K., Ponsuksili S. 2021. Dietary phosphorus and calcium in feed affects miRNA profiles and their mRNA targets in jejunum of two strains of laying hens. Scientific Reports 11, 13534 https://doi.org/10.1038/s41598-021-92932-3

Krieg J., Bodra-Molina D., Siegert W., Sommerfeld V., Chi Y. P., Taheri H. R., Feuerstein D., Camarinha-Silva A., Rodehutscord, M. 2021. Effects of calcium level and source, formic acid, and phytase on phytate degradation and the microbiota in the digestive tract of broiler chickens. Animal Microbiome 3, 23 https://doi.org/10.1186/s42523-021-00083-7

Künzel S., Borda-Molina D., Zuber T., Hartung J., Siegert W., Feuerstein D., Camarinha-Silva A., Rodehutscord, M. 2021. Relative phytase efficacy values as affected by response traits, including ileal microbiota composition. Poultry Science 100, 101133 https://doi.org/10.1016/j.psj.2021.101133

Kurz A., Seifert J. 2021. Factors influencing proteolysis and protein utilization in the intestine of pigs: a review.  Animals 11(12):3551; doi.org/10.3390/ani11123551

Meyer J., Kononov S.U., Grindler S., Tröscher-Mußotter J., Alaedin M.T., Frahm J., Hüther L., Kluess J., Kersten S., von Soosten D., Meyer U., Most E., Eder K., Sauerwein H., Seifert J., Huber K., Wegerich A., Rehage J., Dänicke S. 2021. Dietary L-carnitine supplementation modifies the lipopolysaccharide-induced acute phase reaction in dairy cows. Animals 11, 136 https://doi.org/10.3390/ani11010136

Omotoso A.O., Reyer H., Oster M., Ponsuksili S., Trakooljul N., Muráni E., Sommerfeld V., Rodehutscord M., Wimmers K. 2021. Jejunal transcriptomic profiling of two layer strains throughout the entire production period. Scientific Reports 11, 20086 https://doi.org/10.1038/s41598-021-99566-5

Ponsuksili S., Hadlich F., Reyer H., Oster M., Trakooljul N., Iqbal M.A., Sommerfeld V., Rodehutscord M., Wimmers K. 2021. Genetic background and production periods shape the microRNA profiles of the gut in laying hens. Genomics 113, 1790-1801 https://doi.org/10.1016/j.ygeno.2021.04.018

Ponsuksili S., Oster M., Reyer H., Hadlich F., Trakooljul N., Rodehutscord M., Camarinha-Silva A., Bennewitz J., Wimmers K. 2021. Genetic regulation and heritability of miRNA and mRNA expression link to phosphorus utilization and gut microbiome. Open Biology 11, 200182  https://doi.org/10.1098/rsob.200182

Reyer H., Oster M., Ponsuksili S., Trakooljul N., Omotoso A.O., Iqbal M.A., Muráni E., Sommerfeld V., Rodehutscord M., Wimmers K. 2021. Transcriptional responses in jejunum of two layer chicken strains following variations in dietary calcium and phosphorus levels. BMC Genomics 22, 485 https://doi.org/10.1186/s12864-021-07814-9

Röhm K., Diener M., Huber K., Seifert J. 2021. Characterization of the cecal smooth muscle contraction in laying hens. Vetereinary Science 8, 91 https://doi.org/10.3390/vetsci8060091

Röhm K., Gonzalez-Uarquin F., Harmel R.K., Trung M.N., Diener M., Fiedler D., Huber K., Seifert J. Investigation of a potential electrogenic transport-system for myo-inositol in the small intestine of laying hens. British Poultry Science (in press) https://doi.org/10.1080/00071668.2021.1958301

Saenz J.S., Kurz A., Ruczizka U., Bünger M., Dippel M., Nagl V., Grenier B., Ladinig A., Seifert J., Selberherr E. 2021. Metaproteomics reveals alteration of the gut microbiome in weaned piglets due to the ingestion of the mycotoxins deoxynivalenol and zearalenone. Toxins 13, 583 https://doi.org/10.3390/toxins13080583

Schleicher L., Herdan S., Fritz G., Trautmann A., Seifert J., Steuber J. 2021. Central carbon metabolism, sodium-motive electron transfer, and ammonium formation by the vaginal pathogen Prevotella bivia. International Journal of Molecular Sciences. 22,11925. https://doi.org/10.3390/ijms222111925

Schleicher L., Trautmann A., Stegmann D., Fritz G., Gätgens J., Bott M., Hein S., Simon J., Seifert J., Steuber J. 2021. A sodium-translocating module linking succinate production to formation of a membrane potential in Prevotella bryantii. Applied and Environmental Microbiology. 87(21):e0121121. https://doi.org/10.1128/AEM.01211-21

Schmucker S., Hofmann T., Sommerfeld V., Huber K., Rodehutscord M., Stefanski V. 2021. Immune parameters in two different laying hen strains during five production periods. Poultry Science 100, 101408 https://doi.org/10.1016/j.psj.2021.101408

Siegert W., Krieg J., Sommerfeld V., Borda-Molina D., Feuerstein D., Camarinha-Silva A., Rodehutscord, M. 2021. Phytase supplementation effects on amino acid digestibility in broiler chickens are influenced by dietary calcium concentrations but not by acid-binding capacity. Current Developments in Nutrition 5, nzab 103 https://doi.org/10.1093/cdn/nzab103

Trautmann A., Schleicher L., Pfirrmann J., Boldt C., Steuber J., Seifert J. 2021. Na+-coupled respiration and reshaping of extracellular polysaccharide layer counteract monensin-induced cation permeability in Prevotella bryantii B14. International Journal of Molecular Sciences 22, 10202 https://doi.org/10.3390/ijms22191020

Tröscher-Mußotter J., Saenz J.S., Grindler S., Meyer J., Kononov S.U., Mezger B., Borda-Molina D., Frahm J., Dänicke S., Camarinha-Silva A., Huber K., Seifert J. 2021. Microbiome clusters disclose physiologic variances in dairy cows challenged by calving and lipopolysaccharides. mSystems 6, e00856 https://doi.org/10.1128/mSystems.00856-21

Van Den Bossche T., Arntzen M.Ø., Becher D., Benndorf D., Eijsink V.G.H., Henry C., Jagtap P.D., Jehmlich N., Juste C., Kunath B.J., Mesuere B., Muth T., Pope P.B., Seifert J., Tanca A., Uzzau S., Wilmes P., Hettich R., Armengaud J. (2021) The Metaproteomics Initiative: a coordinated approach for propelling the functional characterization of microbiomes. Microbiomes, 9(1):243. doi.org/10.1186/s40168-021-01176-w

Vollmar S., Haas V., Schmid M., Preuß S., Joshi R., Rodehutscord M., Bennewitz J. 2021. Mapping genes for phosphorus utilization and correlated traits using a 4k SNP linkage map in Japanese quail (Coturnix japonica). Animal Genetics 52, 90–98 doi.org/10.1111/age.13018 doi.org/10.1111/age.13018

Borda-Molina D., Roth C., Hérnandez-Arriaga A., Rissi D., Vollmar S., Rodehutscord M., Bennewitz J., Camarinha-Silva A. 2020. Effects on the ileal microbiota of phosphorus and calcium utilization, bird performance, and gender in japanese quail. Animals 10, 885 https://doi.org/10.3390/ani10050885

Gonzalez-Uarquin F., Rodehutscord M., Huber K. 2020. Myo-inositol: its metabolism and potential implications for poultry nutrition—a review. Poultry Science 99, 893-905 https://doi.org/10.1016/j.psj.2019.10.014

Meyer J., Daniels S.U., Grindler S., Tröscher-Mußotter J., Alaedin M.T., Frahm J., Hüther L., Kluess J., Kersten S., von Soosten D., Meyer U., Most E., Eder K., Sauerwein H., Seifert J., Huber K., Rehage J., Dänicke S. 2020. Effects of a dietary L-carnitine supplementation for dairy cows on performance, energy metabolism and recovery from calving. Animals 10, 342  https://doi.org/10.3390/ani10020342

Oster M., Reyer H., Trakooljul N., Weber F.M., Xi L., Muráni E., Ponsuksili S., Rodehutscord M., Bennewitz J., Wimmers K. 2020. Ileal transcriptome profiles of japanese quail divergent in phosphorus utilization. International Journal of Molecular Sciences 21, 2762 https://doi.org/10.3390/ijms21082762 

Pankoke H., Maus I., Loh G., Hüser A., Seifert J., Tilker A., Hark S., Scyrba A., Pelzer S., Kleinbölting J. 2019. Evaluation of commercially available DNA extraction kits for the analysis of the broiler chicken cecal microbiota. FEMS Microbiology Letters 368, https://doi.org/10.1093/femsle/fnz033

Ponsuksili S., Reyer H., Hadlich F., Weber F., Trakooljul N., Oster M., Siengdee P., Muráni E., Rodehutscord M., Camarinha-Silva A., Bennewitz J., Wimmers K. 2020. Identification of the key molecular drivers of phosphorus utilization based on host miRNA-mRNA and gut microbiome interactions. International Journal of Molecular Sciences 21, 2818 https://doi.org/10.3390/ijms21082818

Rosenfelder-Kuon P., Klein N., Zegowitz G., Thuringer L., Schollenberger M., Kühn I., Seifert J., Rodehutscord M. 2020 Phytate degradation cascade in pigs as affected by phytase supplementation and rapeseed cake inclusion in corn-soybean meal-based diets. Journal of Animal Science 98, 3, skaa053 https://doi.org/10.1093/jas/skaa053

Schleicher L., Fritz G., Seifert J., Steuber J. 2020. Anoxic cell rupture of Prevotella bryantii by high-pressure homogenization protects the Na+-translocating NADH:quinone oxidoreductase from oxidative damage. Archives of Microbiology 202, 1263-1266 https://www.doi.org/10.1007/s00203-019-01805-x

Sommerfeld V., Huber K., Bennewitz J., Camarinha-Silva A., Hasselmann M., Ponsuksili S., Seifert J., Stefanski V., Wimmers K., Rodehutscord M. 2020. Phytate degradation, myo-inositol release, and utilization of phosphorus and calcium by two strains of laying hens in five production periods. Poultry Science 99, 6797–6808 https://doi.org/10.1016/j.psj.2020.08.064

Sommerfeld V., Omotoso A. O., Oster M., Reyer H., Camarinha-Silva A., Hasselmann M., Huber K., Ponsuksili S., Seifert J., Stefanski V., Wimmers K., Rodehutscord M. 2020. Phytate degradation, transcellular mineral transporters, and mineral utilization by two strains of laying hens as affected by dietary phosphorus and calcium. Animals 10, 1736 https://doi.org/10.3390/ani10101736

Trautmann A., Schleicher L., Deusch S., Gätgens J., Steuber J., Seifert J. 2020. Short-chain fatty acids modulate metabolic pathways and membrane lipids in Prevotella bryantii B14. Proteomes 8, 28 https://www.doi.org/10.3390/proteomes8040028

Vollmar S., Wellmann R., Borda-Molina D., Rodehutscord M., Camarinha-Silva A., Bennewitz J. 2020. The gut microbial architecture of efficiency traits in the domestic poultry model species japanese quail (coturnix japonica) assessed by mixed linear kodels. G3: Genes, Genomes, Genetics 10, 2553–2562 https://doi.org/10.1534/g3.120.401424

Weishaar R., Wellmann R., Camarinha-Silva A., Rodehutscord M., Bennewitz, J. 2020. Selecting the hologenome to breed for an improved feed efficiency in pigs—A novel selection index. Journal of Animal Breeding and Genetics 137, 14-22, https://doi.org/10.1111/jbg.12447

Borda-Molina D., Zuber T., Siegert W., Camarinha-Silva A., Feuerstein D., Rodehutscord, M. 2019. Effects of protease and phytase supplements on small intestinal microbiota and amino acid digestibility in broiler chickens. Poultry Science 98, 2906-2918 https://doi.org/10.3382/ps/pez038

Deusch S., Bok E., Schleicher L., Seifert J., Steuber J. 2019. Occurence and function of the Na+ -translocating NADH:quinone oxidoreductase in Prevotella spp. Microorganisms 7, 117 https://doi.org/10.3390/microorganisms7050117

Heyer C. M. E., Schmucker S., Burbach K., Weiss E., Eklund M., Aumiller T., Capezzone F., Steuber J., Rodehutscord M., Hoelzle L. E., Seifert J., Mosenthin R., Stefanski V. 2019. Phytate degradation, intestinal microbiota, microbial metabolites and immune values are changed in growing pigs fed diets with varying calcium-phosphorus concentration and fermentable substrates. Journal of Animal Physiology and Animal Nutrition 103, 1185-1197 https://doi.org/10.1111/jpn.13088

Künzel S., Borda-Molina D., Kraft R., Sommerfeld V., Kühn I., Camarinha-Silva A., Rodehutscord, M. 2019. Impact of coccidiostat and phytase supplementation on gut microbiota composition and phytate degradation in broiler chickens. Animal Microbiome 2, 1 https://doi.org/10.1186/s42523-019-0006-2

Sommerfeld V., van Kessel A. G., Classen H. L., Schollenberger M., Kühn I. Rodehutscord M. 2019. Phytate degradation in gnotobiotic broiler chickens and effects of dietary supplements of phosphorus, calcium, and phytase. Poultry Science 98, 5562-5570 https://doi.org/10.3382/ps/pez309

Tröscher-Mußotter J., Tilocca B., Stefanski V., Seifert J. 2019. Analysis of the bacterial and host proteins along and across the porcine gastrointestinal tract. Proteomes. 7, 4 https://doi.org/10.3390/proteomes7010004